[INFO] fetching crate mzalign 0.1.0...
[INFO] fixing mzalign-0.1.0 against try#622891a4e29178280638a6b63a8908bde2c0c854+cargoflags=-Zfix-edition=start=2015 for pr-157817-2
[INFO] extracting crate mzalign 0.1.0 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate mzalign 0.1.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate mzalign 0.1.0
[INFO] tweaked toml for crates.io crate mzalign 0.1.0 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate mzalign 0.1.0 on toolchain 622891a4e29178280638a6b63a8908bde2c0c854
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate mzalign 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded context_error v0.2.0
[INFO] [stderr]   Downloaded mzcv v0.1.0
[INFO] [stderr]   Downloaded directories v6.0.0
[INFO] [stderr]   Downloaded cc v1.2.45
[INFO] [stderr]   Downloaded thin-vec v0.2.14
[INFO] [stderr]   Downloaded uom v0.37.0
[INFO] [stderr]   Downloaded imgt v0.1.0
[INFO] [stderr]   Downloaded mzcore v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] c9799a8cb762278a7dbc31e1e06140f8a689550e401df3ab150885155830dfee
[INFO] running `Command { std: "docker" "start" "c9799a8cb762278a7dbc31e1e06140f8a689550e401df3ab150885155830dfee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c9799a8cb762278a7dbc31e1e06140f8a689550e401df3ab150885155830dfee" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c9799a8cb762278a7dbc31e1e06140f8a689550e401df3ab150885155830dfee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=" "-e" "RUSTDOCFLAGS=" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c9799a8cb762278a7dbc31e1e06140f8a689550e401df3ab150885155830dfee" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fix" "--allow-no-vcs" "--allow-dirty" "--frozen" "--all" "--all-targets" "--message-format=json" "-Zfix-edition=start=2015", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling libc v0.2.177
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]     Checking simd-adler32 v0.3.7
[INFO] [stderr]    Compiling virtue v0.0.18
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]     Checking iana-time-zone v0.1.64
[INFO] [stderr]     Checking unty v0.0.4
[INFO] [stderr]     Checking regex-syntax v0.8.8
[INFO] [stderr]     Checking digest v0.10.7
[INFO] [stderr]     Checking sha2 v0.10.9
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking roxmltree v0.21.1
[INFO] [stderr]     Checking num-integer v0.1.46
[INFO] [stderr]     Checking chrono v0.4.42
[INFO] [stderr]    Compiling bincode_derive v2.0.1
[INFO] [stderr]     Checking flate2 v1.1.5
[INFO] [stderr]     Checking dirs-sys v0.5.0
[INFO] [stderr]    Compiling syn v2.0.110
[INFO] [stderr]     Checking directories v6.0.0
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]     Checking serde_json v1.0.145
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking context_error v0.2.0
[INFO] [stderr]     Checking bincode v2.0.1
[INFO] [stderr]     Checking thin-vec v0.2.14
[INFO] [stderr]     Checking ordered-float v5.1.0
[INFO] [stderr]     Checking uom v0.37.0
[INFO] [stderr]     Checking mzcv v0.1.0
[INFO] [stderr]     Checking mzcore v0.1.0
[INFO] [stderr]     Checking mzalign v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: extern crate `context_error` is unused in crate `mzalign`
[INFO] [stdout]   |
[INFO] [stdout]   = help: remove the dependency or add `use context_error as _;` to the crate root
[INFO] [stdout]   = note: requested on the command line with `-W unused-crate-dependencies`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find module or crate `mzident` in this scope
[INFO] [stdout]  --> tests/alignment.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use mzident::{PeptidoformPresent, prelude::*};
[INFO] [stdout]   |     ^^^^^^^ use of unresolved module or unlinked crate `mzident`
[INFO] [stdout]   |
[INFO] [stdout]   = help: if you wanted to use a crate named `mzident`, use `cargo add mzident` to add it to your `Cargo.toml`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0432]: unresolved import `mzident`
[INFO] [stdout]  --> tests/alignment.rs:5:5
[INFO] [stdout]   |
[INFO] [stdout] 5 | use mzident::{PeptidoformPresent, prelude::*};
[INFO] [stdout]   |     ^^^^^^^ use of unresolved module or unlinked crate `mzident`
[INFO] [stdout]   |
[INFO] [stdout]   = help: if you wanted to use a crate named `mzident`, use `cargo add mzident` to add it to your `Cargo.toml`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `IdentifiedPeptidoform` in this scope
[INFO] [stdout]   --> tests/alignment.rs:25:14
[INFO] [stdout]    |
[INFO] [stdout] 25 |             &IdentifiedPeptidoform<SimpleLinear, PeptidoformPresent>,
[INFO] [stdout]    |              ^^^^^^^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find type `IdentifiedPeptidoform` in this scope
[INFO] [stdout]   --> tests/alignment.rs:26:14
[INFO] [stdout]    |
[INFO] [stdout] 26 |             &IdentifiedPeptidoform<SimpleLinear, PeptidoformPresent>,
[INFO] [stdout]    |              ^^^^^^^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: extern crate `context_error` is unused in crate `alignment`
[INFO] [stdout]   |
[INFO] [stdout]   = help: remove the dependency or add `use context_error as _;` to the crate root
[INFO] [stdout]   = note: requested on the command line with `-W unused-crate-dependencies`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: extern crate `itertools` is unused in crate `alignment`
[INFO] [stdout]   |
[INFO] [stdout]   = help: remove the dependency or add `use itertools as _;` to the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: extern crate `mzcv` is unused in crate `alignment`
[INFO] [stdout]   |
[INFO] [stdout]   = help: remove the dependency or add `use mzcv as _;` to the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: extern crate `ordered_float` is unused in crate `alignment`
[INFO] [stdout]   |
[INFO] [stdout]   = help: remove the dependency or add `use ordered_float as _;` to the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: extern crate `serde` is unused in crate `alignment`
[INFO] [stdout]   |
[INFO] [stdout]   = help: remove the dependency or add `use serde as _;` to the crate root
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `open_identified_peptidoforms_file` in this scope
[INFO] [stdout]   --> tests/alignment.rs:12:32
[INFO] [stdout]    |
[INFO] [stdout] 12 |     let peptidoforms: Vec<_> = open_identified_peptidoforms_file(
[INFO] [stdout]    |                                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find type `IdentifiedPeptidoform` in this scope
[INFO] [stdout]   --> tests/alignment.rs:19:17
[INFO] [stdout]    |
[INFO] [stdout] 19 |     .filter_map(IdentifiedPeptidoform::into_simple_linear)
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^^^^^^^ use of undeclared type `IdentifiedPeptidoform`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0425]: cannot find function `open_identified_peptidoforms_file` in this scope
[INFO] [stdout]   --> tests/alignment.rs:41:32
[INFO] [stdout]    |
[INFO] [stdout] 41 |     let peptidoforms: Vec<_> = open_identified_peptidoforms_file(
[INFO] [stdout]    |                                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0433]: cannot find type `IdentifiedPeptidoform` in this scope
[INFO] [stdout]   --> tests/alignment.rs:48:17
[INFO] [stdout]    |
[INFO] [stdout] 48 |     .filter_map(IdentifiedPeptidoform::into_simple_linear)
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^^^^^^^ use of undeclared type `IdentifiedPeptidoform`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0425, E0432, E0433.
[INFO] [stdout] 
[INFO] [stdout] For more information about an error, try `rustc --explain E0425`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `mzalign` (test "alignment") due to 8 previous errors; 5 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "c9799a8cb762278a7dbc31e1e06140f8a689550e401df3ab150885155830dfee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c9799a8cb762278a7dbc31e1e06140f8a689550e401df3ab150885155830dfee", kill_on_drop: false }`
[INFO] [stdout] c9799a8cb762278a7dbc31e1e06140f8a689550e401df3ab150885155830dfee
